Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01975.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2915
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:1110 original size:25 final size:25

Alignment explanation


    Indices: 1082--1132  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1072 ATGGAAAGAA

                                     
       1082 AACTACTTTTTCTTTTCATTTTTCT
          1 AACTACTTTTTCTTTTCATTTTTCT

                                     
       1107 AACTACTTTTTCTTTTCATTTTTCT
          1 AACTACTTTTTCTTTTCATTTTTCT

             
       1132 A
          1 A

       1133 TCATTCCTAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.18, C:0.20, G:0.00, T:0.63


Consensus pattern (25 bp):   
AACTACTTTTTCTTTTCATTTTTCT
Done.