Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00330.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2529
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:2395 original size:5 final size:5

Alignment explanation


    Indices: 2377--2417  Score: 50
    Period size: 5  Copynumber: 8.6  Consensus size: 5

       2367 CAGACAAGAC

                        *                        *             
       2377 TGTTT T-TTT AGTTT TGTTT TGTTT T-TTT TTTTT TGTTT TGT
          1 TGTTT TGTTT TGTTT TGTTT TGTTT TGTTT TGTTT TGTTT TGT

       2418 GAGGAGTAAG


Statistics
Matches: 31,  Mismatches: 3, Indels: 4
        0.82            0.08        0.11

Matches are distributed among these distances:
   4    7  0.23
   5   24  0.77

ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83


Consensus pattern (5 bp):   
TGTTT

Found at i:2401 original size:19 final size:19

Alignment explanation


    Indices: 2377--2417  Score: 64
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       2367 CAGACAAGAC

                               
       2377 TGTTTTTTTAGTTTTGTTT
          1 TGTTTTTTTAGTTTTGTTT

                     **        
       2396 TGTTTTTTTTTTTTTGTTT
          1 TGTTTTTTTAGTTTTGTTT

               
       2415 TGT
          1 TGT

       2418 GAGGAGTAAG


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83


Consensus pattern (19 bp):   
TGTTTTTTTAGTTTTGTTT
Done.