Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01982.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1777
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33


Found at i:11 original size:6 final size:6

Alignment explanation


    Indices: 1--34  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

                                                   
          1 ACATAC ACATAC ACATAC ACATAC ACATAC ACAT
          1 ACATAC ACATAC ACATAC ACATAC ACATAC ACAT

         35 GTACTATCTT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18


Consensus pattern (6 bp):   
ACATAC

Found at i:58 original size:6 final size:6

Alignment explanation


    Indices: 47--72  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

         37 ACTATCTTTC

                                          
         47 CCCAAT CCCAAT CCCAAT CCCAAT CC
          1 CCCAAT CCCAAT CCCAAT CCCAAT CC

         73 GTTTGATAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.31, C:0.54, G:0.00, T:0.15


Consensus pattern (6 bp):   
CCCAAT

Done.