Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01984.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1090
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32


Found at i:880 original size:12 final size:12

Alignment explanation


    Indices: 863--887  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        853 AAACTTGCAT

                        
        863 GTGGCAAGCTTG
          1 GTGGCAAGCTTG

                        
        875 GTGGCAAGCTTG
          1 GTGGCAAGCTTG

             
        887 G
          1 G

        888 CAAAGAACTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.16, C:0.16, G:0.44, T:0.24


Consensus pattern (12 bp):   
GTGGCAAGCTTG
Done.