Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02001.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1548
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:116 original size:16 final size:16

Alignment explanation


    Indices: 95--125  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

         85 CCTTTTTCGT

                            
         95 TTTCATTTTCCTTCTC
          1 TTTCATTTTCCTTCTC

                           
        111 TTTCATTTTCCTTCT
          1 TTTCATTTTCCTTCT

        126 ATCTTAAATG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65


Consensus pattern (16 bp):   
TTTCATTTTCCTTCTC
Done.