Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02005.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3075
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:1714 original size:15 final size:18

Alignment explanation


    Indices: 1679--1722  Score: 79
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       1669 TCTCCAGCCT

                              
       1679 ATACCAAAAACAACACTA
          1 ATACCAAAAACAACACTA

                           *  
       1697 ATACCAAAAACAACAATA
          1 ATACCAAAAACAACACTA

                    
       1715 ATACCAAA
          1 ATACCAAA

       1723 GGTGGGTCCA


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.64, C:0.25, G:0.00, T:0.11


Consensus pattern (18 bp):   
ATACCAAAAACAACACTA
Done.