Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00307.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2768
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36


Found at i:1481 original size:21 final size:21

Alignment explanation


    Indices: 1455--1497  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1445 TCCTAAATAC

                          *      
       1455 TATGCTTGTATTTATGATGTA
          1 TATGCTTGTATTTACGATGTA

                                 
       1476 TATGCTTGTATTTACGATGTA
          1 TATGCTTGTATTTACGATGTA

             
       1497 T
          1 T

       1498 GATATTACTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.23, C:0.07, G:0.19, T:0.51


Consensus pattern (21 bp):   
TATGCTTGTATTTACGATGTA
Done.