Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02014.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 800

Length: 1334
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:172 original size:13 final size:13

Alignment explanation


    Indices: 156--204  Score: 82
    Period size: 13  Copynumber: 3.8  Consensus size: 13

        146 CTGTTATGAG

                         
        156 TAGCTAAGTCTGT
          1 TAGCTAAGTCTGT

                     *   
        169 TAGC-AAGTTTGT
          1 TAGCTAAGTCTGT

                         
        181 TAGCTAAGTCTGT
          1 TAGCTAAGTCTGT

                       
        194 TAGCTAAGTCT
          1 TAGCTAAGTCT

        205 ATAAATACTA


Statistics
Matches: 33,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
  12   11  0.33
  13   22  0.67

ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39


Consensus pattern (13 bp):   
TAGCTAAGTCTGT
Done.