Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02021.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3482
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:3179 original size:95 final size:95

Alignment explanation


    Indices: 3016--3208  Score: 386
    Period size: 95  Copynumber: 2.0  Consensus size: 95

       3006 GCATACGAAA

                                                                             
       3016 CTGGTGCTGAAATGGGCTGGGATATTGTTCAAACTTTAGTTGACGAAATGGTAGACGACCTGGTT
          1 CTGGTGCTGAAATGGGCTGGGATATTGTTCAAACTTTAGTTGACGAAATGGTAGACGACCTGGTT

                                          
       3081 TCCTCTTGAATTGCATACATGCCGCATGAT
         66 TCCTCTTGAATTGCATACATGCCGCATGAT

                                                                             
       3111 CTGGTGCTGAAATGGGCTGGGATATTGTTCAAACTTTAGTTGACGAAATGGTAGACGACCTGGTT
          1 CTGGTGCTGAAATGGGCTGGGATATTGTTCAAACTTTAGTTGACGAAATGGTAGACGACCTGGTT

                                          
       3176 TCCTCTTGAATTGCATACATGCCGCATGAT
         66 TCCTCTTGAATTGCATACATGCCGCATGAT

               
       3206 CTG
          1 CTG

       3209 TGAGTATCTT


Statistics
Matches: 98,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  95   98  1.00

ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32


Consensus pattern (95 bp):   
CTGGTGCTGAAATGGGCTGGGATATTGTTCAAACTTTAGTTGACGAAATGGTAGACGACCTGGTT
TCCTCTTGAATTGCATACATGCCGCATGAT
Done.