Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02034.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29


Found at i:976 original size:2 final size:2

Alignment explanation


    Indices: 969--1015  Score: 76
    Period size: 2  Copynumber: 23.5  Consensus size: 2

        959 TTTTGTATTT

                                                                *     *   
        969 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                   
       1011 TA TA T
          1 TA TA T

       1016 TAATTTGCAT


Statistics
Matches: 41,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   2   41  1.00

ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51


Consensus pattern (2 bp):   
TA

Done.