Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02039.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3807
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30


Found at i:3604 original size:41 final size:42

Alignment explanation


    Indices: 3526--3616  Score: 114
    Period size: 41  Copynumber: 2.2  Consensus size: 42

       3516 TCGACATAAT

                                    *                 
       3526 CCAGTGCAAGGTTAAAGTATGGTTGGCAGACTCGGACCCAAC
          1 CCAGTGCAAGGTTAAAGTATGGTTAGCAGACTCGGACCCAAC

                    *                      * *      *  
       3568 CCAGTGCAGGGTT-AAGCT-TGGTTAGCAGATTTGGACCCGAC
          1 CCAGTGCAAGGTTAAAG-TATGGTTAGCAGACTCGGACCCAAC

                    
       3609 CCAGTGCA
          1 CCAGTGCA

       3617 CAGACCATAC


Statistics
Matches: 43,  Mismatches: 5, Indels: 3
        0.84            0.10        0.06

Matches are distributed among these distances:
  41   30  0.70
  42   13  0.30

ACGTcount: A:0.25, C:0.24, G:0.30, T:0.21


Consensus pattern (42 bp):   
CCAGTGCAAGGTTAAAGTATGGTTAGCAGACTCGGACCCAAC
Done.