Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00308.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2709
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:310 original size:20 final size:22

Alignment explanation


    Indices: 273--313  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        263 TTTCCTCATT

                *                 
        273 TTTGTTGAATTTATAATATTTA
          1 TTTGGTGAATTTATAATATTTA

                                 
        295 TTTGGTGAA-TTA-AATATTT
          1 TTTGGTGAATTTATAATATTT

        314 TTTCATCTTC


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    7  0.39
  21    3  0.17
  22    8  0.44

ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56


Consensus pattern (22 bp):   
TTTGGTGAATTTATAATATTTA
Done.