Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00309.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2042
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26


Found at i:1163 original size:36 final size:36

Alignment explanation


    Indices: 1123--1318  Score: 180
    Period size: 36  Copynumber: 5.4  Consensus size: 36

       1113 TAGCAATATG

                 *                             *
       1123 GGGCCCGGCCGGCCTGGTGGTGCTAACAATGGTACC
          1 GGGCCTGGCCGGCCTGGTGGTGCTAACAATGGTACA

                  *    *                        *
       1159 GGGCCTAGCCGACCTGGTGGTG-TAAGCAATGGTACT
          1 GGGCCTGGCCGGCCTGGTGGTGCTAA-CAATGGTACA

                    *                   *    * *
       1195 GGGCCTGGTCGGCCTGGTGGTGCTAACAGTGGTTCT
          1 GGGCCTGGCCGGCCTGGTGGTGCTAACAATGGTACA

             **         *      *     *       *  
       1231 GTTCCTGGCCGGGCTGGTGCTGCTAGCAATGGTGCA
          1 GGGCCTGGCCGGCCTGGTGGTGCTAACAATGGTACA

               *            *   *             *  
       1267 GGGTCTGGCCGGCCTGTTGGCGC-AAGCAATGGTGCA
          1 GGGCCTGGCCGGCCTGGTGGTGCTAA-CAATGGTACA

               *            
       1303 GGGTCTGGCCGGCCTG
          1 GGGCCTGGCCGGCCTG

       1319 CTGGCCCTAA


Statistics
Matches: 131,  Mismatches: 26, Indels: 6
        0.80            0.16        0.04

Matches are distributed among these distances:
  35    4  0.03
  36  124  0.95
  37    3  0.02

ACGTcount: A:0.12, C:0.26, G:0.40, T:0.22


Consensus pattern (36 bp):   
GGGCCTGGCCGGCCTGGTGGTGCTAACAATGGTACA

Done.