Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00310.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2733
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28


Found at i:2544 original size:30 final size:30

Alignment explanation


    Indices: 2508--2568  Score: 122
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       2498 ACGAAGGGAA

                                          
       2508 GAAGAAACTATTATGGTTTTTCACAGATTT
          1 GAAGAAACTATTATGGTTTTTCACAGATTT

                                          
       2538 GAAGAAACTATTATGGTTTTTCACAGATTT
          1 GAAGAAACTATTATGGTTTTTCACAGATTT

             
       2568 G
          1 G

       2569 CAGAGAAGTG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39


Consensus pattern (30 bp):   
GAAGAAACTATTATGGTTTTTCACAGATTT
Done.