Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02081.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 318

Length: 530
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:467 original size:26 final size:26

Alignment explanation


    Indices: 431--481  Score: 86
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        421 ACAGAGGCTT

                                       
        431 AGTTGTGACCACAC-GTTCATAAACTC
          1 AGTTGTGACCACACAG-TCATAAACTC

                                     
        457 AGTTGTGACCACACAGTCATAAACT
          1 AGTTGTGACCACACAGTCATAAACT

        482 TTGTTTTCAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  26   23  0.96
  27    1  0.04

ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25


Consensus pattern (26 bp):   
AGTTGTGACCACACAGTCATAAACTC
Done.