Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02094.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3916
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:263 original size:69 final size:68

Alignment explanation


    Indices: 152--289  Score: 258
    Period size: 69  Copynumber: 2.0  Consensus size: 68

        142 GATAGGAAAA

                                                                    *        
        152 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTTGTGGTAGG
          1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTT-TAGTGGTGGTAGG

                
        217 GCTG
         65 GCTG

                                                                             
        221 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTTAGTGGTGGTAGGG
          1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTTAGTGGTGGTAGGG

               
        286 CTG
         66 CTG

             
        289 A
          1 A

        290 TAGAGTCTTG


Statistics
Matches: 68,  Mismatches: 1, Indels: 1
        0.97            0.01        0.01

Matches are distributed among these distances:
  68   17  0.25
  69   51  0.75

ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28


Consensus pattern (68 bp):   
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTTAGTGGTGGTAGGG
CTG
Done.