Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02100.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 307

Length: 512
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28


Found at i:261 original size:3 final size:3

Alignment explanation


    Indices: 253--287  Score: 70
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        243 CCATTTTCTC

                                                          
        253 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG

        288 GTGATGAAAC


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00


Consensus pattern (3 bp):   
AGA

Done.