Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02102.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5398
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:2381 original size:8 final size:9

Alignment explanation


    Indices: 2356--2380  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       2346 AGCTGGTGAG

                     
       2356 CCCCCCCCA
          1 CCCCCCCCA

                     
       2365 CCCCCCCCA
          1 CCCCCCCCA

                   
       2374 CCCCCCC
          1 CCCCCCC

       2381 AAAAAAAAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.08, C:0.92, G:0.00, T:0.00


Consensus pattern (9 bp):   
CCCCCCCCA
Done.