Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02111.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3950
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31


Found at i:2935 original size:80 final size:80

Alignment explanation


    Indices: 2802--2961  Score: 311
    Period size: 80  Copynumber: 2.0  Consensus size: 80

       2792 TATACTATGG

                                                                             
       2802 TGCATTGGGCTGTGAAAATGACTATATTAACTTTATTCTTTGTGTCGTGTTAACTTTATCTACTG
          1 TGCATTGGGCTGTGAAAATGACTATATTAACTTTATTCTTTGTGTCGTGTTAACTTTATCTACTG

                  *        
       2867 TCTTTTGATAAAGAA
         66 TCTTTTAATAAAGAA

                                                                             
       2882 TGCATTGGGCTGTGAAAATGACTATATTAACTTTATTCTTTGTGTCGTGTTAACTTTATCTACTG
          1 TGCATTGGGCTGTGAAAATGACTATATTAACTTTATTCTTTGTGTCGTGTTAACTTTATCTACTG

                           
       2947 TCTTTTAATAAAGAA
         66 TCTTTTAATAAAGAA

       2962 CTTACTATAA


Statistics
Matches: 79,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  80   79  1.00

ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44


Consensus pattern (80 bp):   
TGCATTGGGCTGTGAAAATGACTATATTAACTTTATTCTTTGTGTCGTGTTAACTTTATCTACTG
TCTTTTAATAAAGAA
Done.