Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02118.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1233
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27


Found at i:412 original size:48 final size:48

Alignment explanation


    Indices: 341--627  Score: 326
    Period size: 48  Copynumber: 5.9  Consensus size: 48

        331 TTCACCACCA

                   *   *  *     *        *     *         *  
        341 CCAAAGCGTCCCGTCTACCCCAGTCCTCCTATTGTAAAGCCGCCAGCG
          1 CCAAAGCCTCCTGTATACCCAAGTCCTCCCATTGTGAAGCCGCCAACG

                       *  *     *                           *
        389 CCAAAGCCTCCCGTCTACCCCAGTCCTCCCATTGTGAAGCCGCC-ACTT
          1 CCAAAGCCTCCTGTATACCCAAGTCCTCCCATTGTGAAGCCGCCAAC-G

                                              *          ***
        437 CCAAAGCCTCCTGTATACCCAAGTCCTCCCATTGCGAAGCCGCCAGTT
          1 CCAAAGCCTCCTGTATACCCAAGTCCTCCCATTGTGAAGCCGCCAACG

                                                           *
        485 CCAAAGCCTCCTGTATACCCAAGTCCTCCCATTGTGAAGCCGCCAACA
          1 CCAAAGCCTCCTGTATACCCAAGTCCTCCCATTGTGAAGCCGCCAACG

                **                                          
        533 CCAACCCCTCCTGTATACCCAAGTCCTCCCATTGTGAAGCCGCCAACG
          1 CCAAAGCCTCCTGTATACCCAAGTCCTCCCATTGTGAAGCCGCCAACG

                                                            
        581 CCAACGCCAACGCCTCCTGTATACCCAAGTCCT-CCAGTTGTGAAGCC
          1 CC-A----AA-GCCTCCTGTATACCCAAGTCCTCCCA-TTGTGAAGCC

        628 ACCTCCAGTG


Statistics
Matches: 210,  Mismatches: 20, Indels: 12
        0.87            0.08        0.05

Matches are distributed among these distances:
  47    1  0.00
  48  173  0.82
  49    1  0.00
  53    4  0.02
  54   31  0.15

ACGTcount: A:0.23, C:0.42, G:0.16, T:0.20


Consensus pattern (48 bp):   
CCAAAGCCTCCTGTATACCCAAGTCCTCCCATTGTGAAGCCGCCAACG

Done.