Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02122.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4111
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:1903 original size:6 final size:7

Alignment explanation


    Indices: 1885--1910  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

       1875 GTCTCACAGT

                   
       1885 ATTTTTA
          1 ATTTTTA

                   
       1892 ATTTTTA
          1 ATTTTTA

                   
       1899 ATTTTTA
          1 ATTTTTA

                 
       1906 ATTTT
          1 ATTTT

       1911 GCAAATTTGC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73


Consensus pattern (7 bp):   
ATTTTTA
Done.