Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02125.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2620
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:2406 original size:11 final size:11

Alignment explanation


    Indices: 2390--2415  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       2380 AAAAGAAATT

                       
       2390 CAATCTCACTG
          1 CAATCTCACTG

                       
       2401 CAATCTCACTG
          1 CAATCTCACTG

                
       2412 CAAT
          1 CAAT

       2416 AGTGAAACGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.31, C:0.35, G:0.08, T:0.27


Consensus pattern (11 bp):   
CAATCTCACTG
Done.