Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02139.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3857
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1195 original size:34 final size:34

Alignment explanation


    Indices: 1150--1223  Score: 105
    Period size: 35  Copynumber: 2.1  Consensus size: 34

       1140 TTGCATCTAA

                  *     *                      
       1150 ATGTTGTTTTAATATTG-TAGAAAAATGTATTATT
          1 ATGTTGATTTAAAATTGTTA-AAAAATGTATTATT

                                               
       1184 ATGTTGATTTAAAATTGTTTAAAAAATGTATTATT
          1 ATGTTGATTTAAAATTG-TTAAAAAATGTATTATT

                 
       1219 ATGTT
          1 ATGTT

       1224 ATGTTACACT


Statistics
Matches: 36,  Mismatches: 2, Indels: 3
        0.88            0.05        0.07

Matches are distributed among these distances:
  34   15  0.42
  35   19  0.53
  36    2  0.06

ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50


Consensus pattern (34 bp):   
ATGTTGATTTAAAATTGTTAAAAAATGTATTATT
Done.