Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02155.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4497
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38


Found at i:3193 original size:15 final size:14

Alignment explanation


    Indices: 3173--3202  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       3163 TGGTCACAAA

                           
       3173 ATGATTAAAATATAT
          1 ATGATTAAAAT-TAT

                          
       3188 ATGATTAAAATTAT
          1 ATGATTAAAATTAT

             
       3202 A
          1 A

       3203 GACTTCTTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.27
  15   11  0.73

ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40


Consensus pattern (14 bp):   
ATGATTAAAATTAT

Found at i:3247 original size:15 final size:16

Alignment explanation


    Indices: 3227--3256  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       3217 TTTTTGTCTT

                            
       3227 ATATATGAT-TAAAAA
          1 ATATATGATCTAAAAA

                           
       3242 ATATATGATCTAAAA
          1 ATATATGATCTAAAA

       3257 GCAAGAGAGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33


Consensus pattern (16 bp):   
ATATATGATCTAAAAA
Done.