Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02171.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 976

Length: 1627
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:663 original size:2 final size:2

Alignment explanation


    Indices: 656--695  Score: 53
    Period size: 2  Copynumber: 19.5  Consensus size: 2

        646 GAATAAAAGG

                           **                                          
        656 TC TC TC TC TC GG TGC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC T-C TC TC TC TC TC TC TC TC TC TC TC TC T

        696 ATACGTAAAC


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
   2   32  0.97
   3    1  0.03

ACGTcount: A:0.00, C:0.45, G:0.07, T:0.47


Consensus pattern (2 bp):   
TC

Done.