Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00326.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 884

Length: 1474
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:1017 original size:18 final size:16

Alignment explanation


    Indices: 978--1018  Score: 55
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        968 TGCCTATTTT

                           *
        978 GTTTCAAAACCTAGAG
          1 GTTTCAAAACCTAGAC

                              
        994 GTTTCAAAACCTGAGAAC
          1 GTTTCAAAACCT-AG-AC

                   
       1012 GTTTCAA
          1 GTTTCAA

       1019 CAATGGGGAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  16   12  0.55
  17    2  0.09
  18    8  0.36

ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27


Consensus pattern (16 bp):   
GTTTCAAAACCTAGAC
Done.