Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02172.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3535
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30


Found at i:3324 original size:4 final size:4

Alignment explanation


    Indices: 3315--3340  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

       3305 CATCTATTCC

                                            
       3315 TTGT TTGT TTGT TTGT TTGT TTGT TT
          1 TTGT TTGT TTGT TTGT TTGT TTGT TT

       3341 TTTTTTTTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77


Consensus pattern (4 bp):   
TTGT

Done.