Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02178.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847

Length: 1413
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27


Found at i:236 original size:3 final size:3

Alignment explanation


    Indices: 230--261  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        220 TCCATTGAAC

                                                      
        230 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CC
          1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CC

        262 CGGACCTACT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.31, C:0.69, G:0.00, T:0.00


Consensus pattern (3 bp):   
CCA

Found at i:1357 original size:7 final size:7

Alignment explanation


    Indices: 1311--1356  Score: 83
    Period size: 7  Copynumber: 6.6  Consensus size: 7

       1301 TTCTCCGATA

                   
       1311 TGCCCAT
          1 TGCCCAT

                   
       1318 TGCCCAT
          1 TGCCCAT

                   
       1325 TGCCCAT
          1 TGCCCAT

                   
       1332 TGCCCAT
          1 TGCCCAT

                   
       1339 TGCCCAT
          1 TGCCCAT

                *  
       1346 TGCCAAT
          1 TGCCCAT

                
       1353 TGCC
          1 TGCC

       1357 ATGTGAAGTC


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   7   38  1.00

ACGTcount: A:0.15, C:0.41, G:0.15, T:0.28


Consensus pattern (7 bp):   
TGCCCAT
Done.