Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02179.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1080
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25


Found at i:643 original size:3 final size:3

Alignment explanation


    Indices: 635--666  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        625 AGTAGGTCCG

                                                      
        635 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
          1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG

        667 GTTCAATGGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.00, C:0.00, G:0.69, T:0.31


Consensus pattern (3 bp):   
GGT

Done.