Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02184.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6445
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31


Found at i:426 original size:26 final size:26

Alignment explanation


    Indices: 397--449  Score: 72
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        387 TTTACAGTTT

                                       
        397 TACCCCTAGGAGATAAATT-ACCGAAA
          1 TACCCCTAGG-GATAAATTGACCGAAA

                       *          *   
        423 TACCCCTAGGGTTAAATTGACCTAAA
          1 TACCCCTAGGGATAAATTGACCGAAA

             
        449 T
          1 T

        450 GCATGTTTGA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  25    7  0.29
  26   17  0.71

ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25


Consensus pattern (26 bp):   
TACCCCTAGGGATAAATTGACCGAAA

Found at i:4633 original size:25 final size:26

Alignment explanation


    Indices: 4592--4699  Score: 175
    Period size: 25  Copynumber: 4.2  Consensus size: 26

       4582 TGATACAAAT

                                      
       4592 TGATAATGGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                                *     
       4618 TGATAAT-GGTTAGGTAAATATTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                                   *  
       4643 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                                   *  
       4669 TGATAAT-GGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                  
       4694 TGATAA
          1 TGATAA

       4700 GAATTTCATG


Statistics
Matches: 78,  Mismatches: 3, Indels: 3
        0.93            0.04        0.04

Matches are distributed among these distances:
  25   48  0.62
  26   30  0.38

ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTCCA

Found at i:4647 original size:51 final size:51

Alignment explanation


    Indices: 4592--4699  Score: 189
    Period size: 51  Copynumber: 2.1  Consensus size: 51

       4582 TGATACAAAT

                                                               
       4592 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA

                                   *                     *  *  
       4643 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA

                  
       4694 TGATAA
          1 TGATAA

       4700 GAATTTCATG


Statistics
Matches: 54,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  51   54  1.00

ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37


Consensus pattern (51 bp):   
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA
Done.