Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02186.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 402

Length: 670
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29


Found at i:640 original size:18 final size:18

Alignment explanation


    Indices: 617--652  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        607 ATGTCATGTG

                              
        617 TTGAACACTTTTGTTTAT
          1 TTGAACACTTTTGTTTAT

                              
        635 TTGAACACTTTTGTTTAT
          1 TTGAACACTTTTGTTTAT

        653 GACATTTATA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56


Consensus pattern (18 bp):   
TTGAACACTTTTGTTTAT
Done.