Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02201.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1788
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28


Found at i:1737 original size:32 final size:33

Alignment explanation


    Indices: 1691--1755  Score: 105
    Period size: 32  Copynumber: 2.0  Consensus size: 33

       1681 TCATGTATAT

                 *                           
       1691 TTTGAGCTACTGTAGTATAA-TATATTAATAAA
          1 TTTGAACTACTGTAGTATAATTATATTAATAAA

                     *                       
       1723 TTTGAACTATTGTAGTATAATTATATTAATAAA
          1 TTTGAACTACTGTAGTATAATTATATTAATAAA

       1756 ATGAAATAAA


Statistics
Matches: 30,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  32   18  0.60
  33   12  0.40

ACGTcount: A:0.42, C:0.05, G:0.11, T:0.43


Consensus pattern (33 bp):   
TTTGAACTACTGTAGTATAATTATATTAATAAA

Done.