Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02221.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3597
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28


Found at i:80 original size:6 final size:6

Alignment explanation


    Indices: 40--90  Score: 66
    Period size: 6  Copynumber: 8.5  Consensus size: 6

         30 CGATGCTCTC

                *      *      *                                *   
         40 CTCCCT CTCCCT CTCCCT CTCCTT CTCCTT CTCCTT CTCCTT CTTCTT
          1 CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT

               
         88 CTC
          1 CTC

         91 TTCGTTGTTG


Statistics
Matches: 42,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   42  1.00

ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45


Consensus pattern (6 bp):   
CTCCTT

Done.