Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02224.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3479
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30


Found at i:2740 original size:136 final size:136

Alignment explanation


    Indices: 2496--2768  Score: 546
    Period size: 136  Copynumber: 2.0  Consensus size: 136

       2486 CTCGTCTTCC

                                                                             
       2496 AACCTCACCTTTCCCAAAAAAGCTCTCAGCTCCAAGTTCAGAAGCTCTCTTGTGTGCTTGTTTCA
          1 AACCTCACCTTTCCCAAAAAAGCTCTCAGCTCCAAGTTCAGAAGCTCTCTTGTGTGCTTGTTTCA

                                                                             
       2561 AGAATTTGAGGACTTCAGCCTCTTTATCAAGGTCTTGGGAGAGAATTGTGACCAATGTCCGTAGC
         66 AGAATTTGAGGACTTCAGCCTCTTTATCAAGGTCTTGGGAGAGAATTGTGACCAATGTCCGTAGC

                  
       2626 ACTACA
        131 ACTACA

                                                                             
       2632 AACCTCACCTTTCCCAAAAAAGCTCTCAGCTCCAAGTTCAGAAGCTCTCTTGTGTGCTTGTTTCA
          1 AACCTCACCTTTCCCAAAAAAGCTCTCAGCTCCAAGTTCAGAAGCTCTCTTGTGTGCTTGTTTCA

                                                                             
       2697 AGAATTTGAGGACTTCAGCCTCTTTATCAAGGTCTTGGGAGAGAATTGTGACCAATGTCCGTAGC
         66 AGAATTTGAGGACTTCAGCCTCTTTATCAAGGTCTTGGGAGAGAATTGTGACCAATGTCCGTAGC

                  
       2762 ACTACA
        131 ACTACA

             
       2768 A
          1 A

       2769 CTTCTGTTGT


Statistics
Matches: 137,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 136  137  1.00

ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29


Consensus pattern (136 bp):   
AACCTCACCTTTCCCAAAAAAGCTCTCAGCTCCAAGTTCAGAAGCTCTCTTGTGTGCTTGTTTCA
AGAATTTGAGGACTTCAGCCTCTTTATCAAGGTCTTGGGAGAGAATTGTGACCAATGTCCGTAGC
ACTACA
Done.