Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02236.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3145
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35


Found at i:3109 original size:33 final size:33

Alignment explanation


    Indices: 3067--3145  Score: 140
    Period size: 33  Copynumber: 2.4  Consensus size: 33

       3057 TCACTTGTAC

                      *                      
       3067 TATTTGTAAATGTGACATGGTGAATAATGTTAG
          1 TATTTGTAAACGTGACATGGTGAATAATGTTAG

                                             
       3100 TATTTGTAAACGTGACATGGTGAATAATGTTAG
          1 TATTTGTAAACGTGACATGGTGAATAATGTTAG

                 *       
       3133 TATTTTTAAACGT
          1 TATTTGTAAACGT


Statistics
Matches: 44,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  33   44  1.00

ACGTcount: A:0.33, C:0.05, G:0.22, T:0.41


Consensus pattern (33 bp):   
TATTTGTAAACGTGACATGGTGAATAATGTTAG
Done.