Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02236.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4170
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36


Found at i:3574 original size:33 final size:33

Alignment explanation


    Indices: 3532--3629  Score: 169
    Period size: 33  Copynumber: 3.0  Consensus size: 33

       3522 TCACTTGTAC

                      *                      
       3532 TATTTGTAAATGTGACATGGTGAATAATGTTAG
          1 TATTTGTAAACGTGACATGGTGAATAATGTTAG

                                             
       3565 TATTTGTAAACGTGACATGGTGAATAATGTTAG
          1 TATTTGTAAACGTGACATGGTGAATAATGTTAG

                 *            *             
       3598 TATTTTTAAACGTGACATAGTGAATAATGTTA
          1 TATTTGTAAACGTGACATGGTGAATAATGTTA

       3630 TTCTGAATCT


Statistics
Matches: 62,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  33   62  1.00

ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39


Consensus pattern (33 bp):   
TATTTGTAAACGTGACATGGTGAATAATGTTAG
Done.