Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00334.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 493

Length: 822
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29


Found at i:334 original size:25 final size:23

Alignment explanation


    Indices: 289--336  Score: 60
    Period size: 25  Copynumber: 2.0  Consensus size: 23

        279 AGCAAAGCAA

                          *        
        289 AGCAAAACCCATCATTAATCTAC
          1 AGCAAAACCCATCAGTAATCTAC

                              *      
        312 AGCAAAACCACCATCAGTCATCTAC
          1 AGCAAAA-C-CCATCAGTAATCTAC

        337 TACAGTTAAG


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  23    7  0.33
  24    1  0.05
  25   13  0.62

ACGTcount: A:0.42, C:0.33, G:0.06, T:0.19


Consensus pattern (23 bp):   
AGCAAAACCCATCAGTAATCTAC
Done.