Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00338.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1631
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32


Found at i:126 original size:20 final size:20

Alignment explanation


    Indices: 101--138  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

         91 CATTCAGTTT

                                
        101 TTTTTTTCCTTAATTCCCCC
          1 TTTTTTTCCTTAATTCCCCC

                    *         
        121 TTTTTTTCTTTAATTCCC
          1 TTTTTTTCCTTAATTCCC

        139 AGCTTCTCTG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.11, C:0.29, G:0.00, T:0.61


Consensus pattern (20 bp):   
TTTTTTTCCTTAATTCCCCC

Found at i:478 original size:3 final size:3

Alignment explanation


    Indices: 470--510  Score: 82
    Period size: 3  Copynumber: 13.7  Consensus size: 3

        460 ATGAAAAGTG

                                                                  
        470 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT

        511 CCCTCACAGC


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66


Consensus pattern (3 bp):   
CTT

Done.