Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02262.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3025
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35


Found at i:606 original size:26 final size:27

Alignment explanation


    Indices: 557--610  Score: 92
    Period size: 26  Copynumber: 2.0  Consensus size: 27

        547 GCATATGTTC

                              *        
        557 TTTGAAGAGGCCTTTTTTTTTTTCTTT
          1 TTTGAAGAGGCCTTTTTTCTTTTCTTT

                                       
        584 TTTGAAGAGGCC-TTTTTCTTTTCTTT
          1 TTTGAAGAGGCCTTTTTTCTTTTCTTT

             
        610 T
          1 T

        611 CTTTTCTTTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  26   14  0.54
  27   12  0.46

ACGTcount: A:0.11, C:0.13, G:0.15, T:0.61


Consensus pattern (27 bp):   
TTTGAAGAGGCCTTTTTTCTTTTCTTT
Done.