Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02264.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3893
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32


Found at i:2182 original size:33 final size:33

Alignment explanation


    Indices: 2144--2267  Score: 230
    Period size: 33  Copynumber: 3.8  Consensus size: 33

       2134 CTCTGTTTGA

                                             
       2144 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
          1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT

                       *                     
       2177 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
          1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT

                                             
       2210 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
          1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT

                         *           
       2243 GGTTGCTGGACAGTAGCTGGAATGT
          1 GGTTGCTGGACAGGAGCTGGAATGT

       2268 CAAGAAGAAA


Statistics
Matches: 88,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   88  1.00

ACGTcount: A:0.18, C:0.10, G:0.43, T:0.30


Consensus pattern (33 bp):   
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT

Done.