Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02269.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2696
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:609 original size:71 final size:71

Alignment explanation


    Indices: 493--635  Score: 286
    Period size: 71  Copynumber: 2.0  Consensus size: 71

        483 TCCTCATATT

                                                                             
        493 GTCATGAAAATGGGAATTGTTGGATTTGGTTACTTCAAATTGTAACCATGGGGTGGTTTCAAGAA
          1 GTCATGAAAATGGGAATTGTTGGATTTGGTTACTTCAAATTGTAACCATGGGGTGGTTTCAAGAA

                  
        558 TCTGAG
         66 TCTGAG

                                                                             
        564 GTCATGAAAATGGGAATTGTTGGATTTGGTTACTTCAAATTGTAACCATGGGGTGGTTTCAAGAA
          1 GTCATGAAAATGGGAATTGTTGGATTTGGTTACTTCAAATTGTAACCATGGGGTGGTTTCAAGAA

                  
        629 TCTGAG
         66 TCTGAG

             
        635 G
          1 G

        636 GTCCTTCAGT


Statistics
Matches: 72,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  71   72  1.00

ACGTcount: A:0.28, C:0.10, G:0.29, T:0.34


Consensus pattern (71 bp):   
GTCATGAAAATGGGAATTGTTGGATTTGGTTACTTCAAATTGTAACCATGGGGTGGTTTCAAGAA
TCTGAG
Done.