Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02272.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 968

Length: 1614
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29


Found at i:1457 original size:2 final size:2

Alignment explanation


    Indices: 1445--1481  Score: 56
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       1435 AGAATAGCGG

                                                       *          
       1445 AT AT AT CAT AT AT AT AT AT AT AT AT AT AT CT AT AT AT
          1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1482 TTCTCTAACG


Statistics
Matches: 32,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
   2   30  0.94
   3    2  0.06

ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.