Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02286.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 890

Length: 1484
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27


Found at i:1041 original size:32 final size:32

Alignment explanation


    Indices: 1000--1062  Score: 126
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        990 ATAAAAAAGC

                                            
       1000 TGAAATCAGGGAACGAGATTGGTGCAATGTGT
          1 TGAAATCAGGGAACGAGATTGGTGCAATGTGT

                                           
       1032 TGAAATCAGGGAACGAGATTGGTGCAATGTG
          1 TGAAATCAGGGAACGAGATTGGTGCAATGTG

       1063 GTTACATGCC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.32, C:0.10, G:0.35, T:0.24


Consensus pattern (32 bp):   
TGAAATCAGGGAACGAGATTGGTGCAATGTGT
Done.