Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00343.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1676
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30


Found at i:314 original size:42 final size:41

Alignment explanation


    Indices: 256--383  Score: 175
    Period size: 42  Copynumber: 3.0  Consensus size: 41

        246 TTCCAACAAG

                             *      *    *            
        256 AAGAACCAAACCAAGCTTGTTAAACCATCAAATGTATCCACC
          1 AAGAACCAAACCAAGCTCGTTAAATCAT-GAATGTATCCACC

                             *   *                    
        298 AAGAACCAAACCAAGCTGGTTGAATCAGTGAATGTATCCACC
          1 AAGAACCAAACCAAGCTCGTTAAATCA-TGAATGTATCCACC

                                                  *   
        340 AAGAACCAAACCAAGCTCGTTAAATCATTGAATGTATCAACC
          1 AAGAACCAAACCAAGCTCGTTAAATCA-TGAATGTATCCACC

              
        382 AA
          1 AA

        384 AACGTCGAAT


Statistics
Matches: 77,  Mismatches: 8, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
  42   76  0.99
  43    1  0.01

ACGTcount: A:0.42, C:0.25, G:0.13, T:0.20


Consensus pattern (41 bp):   
AAGAACCAAACCAAGCTCGTTAAATCATGAATGTATCCACC
Done.