Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02290.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3968
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29


Found at i:1162 original size:9 final size:9

Alignment explanation


    Indices: 1148--1177  Score: 60
    Period size: 9  Copynumber: 3.3  Consensus size: 9

       1138 ATCCGGAGCC

                     
       1148 TTTGTACCA
          1 TTTGTACCA

                     
       1157 TTTGTACCA
          1 TTTGTACCA

                     
       1166 TTTGTACCA
          1 TTTGTACCA

               
       1175 TTT
          1 TTT

       1178 CTCGTCATCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50


Consensus pattern (9 bp):   
TTTGTACCA
Done.