Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02323.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3041
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23


Found at i:2633 original size:51 final size:51

Alignment explanation


    Indices: 2569--2684  Score: 133
    Period size: 51  Copynumber: 2.3  Consensus size: 51

       2559 ATGGAAACAT

                           **   *            *              *  
       2569 GATATGATATTATAATCTTAGAGATCTTAGATATGATATGGAATCTTATAA
          1 GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA

                 *  *             *      **         *          
       2620 GATATTATTTTATAAGATTACATATCTTATCTAAGATATGTAATCTTAGAA
          1 GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA

                          
       2671 GATATGATATTATA
          1 GATATGATATTATA

       2685 TTTGGTAGTA


Statistics
Matches: 52,  Mismatches: 13, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  51   52  1.00

ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41


Consensus pattern (51 bp):   
GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
Done.