Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00349.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4257
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:553 original size:20 final size:20

Alignment explanation


    Indices: 528--579  Score: 95
    Period size: 20  Copynumber: 2.6  Consensus size: 20

        518 TCTATGAATG

                                
        528 ATCCGATGCCTTGTTAAGAA
          1 ATCCGATGCCTTGTTAAGAA

                                
        548 ATCCGATGCCTTGTTAAGAA
          1 ATCCGATGCCTTGTTAAGAA

                *       
        568 ATCCAATGCCTT
          1 ATCCGATGCCTT

        580 TATGTATGTT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  20   31  1.00

ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31


Consensus pattern (20 bp):   
ATCCGATGCCTTGTTAAGAA
Done.