Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00335.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3230
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35


Found at i:801 original size:12 final size:12

Alignment explanation


    Indices: 784--809  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        774 TAATTACAAA

                        
        784 AAAAAAAAAAAG
          1 AAAAAAAAAAAG

                        
        796 AAAAAAAAAAAG
          1 AAAAAAAAAAAG

              
        808 AA
          1 AA

        810 GAAGAAGCCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00


Consensus pattern (12 bp):   
AAAAAAAAAAAG

Found at i:801 original size:15 final size:15

Alignment explanation


    Indices: 781--812  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        771 TCTTAATTAC

                           
        781 AAAAAAAAAAAAAAG
          1 AAAAAAAAAAAAAAG

                       *   
        796 AAAAAAAAAAAGAAG
          1 AAAAAAAAAAAAAAG

              
        811 AA
          1 AA

        813 GAAGCCAAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00


Consensus pattern (15 bp):   
AAAAAAAAAAAAAAG
Done.