Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00350.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1785
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34


Found at i:64 original size:15 final size:16

Alignment explanation


    Indices: 33--65  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

         23 TGCCACCATT

                      *     
         33 TTTATTCATCTTTCCA
          1 TTTATTCATCATTCCA

                            
         49 TTTATTCAT-ATTCCA
          1 TTTATTCATCATTCCA

              
         64 TT
          1 TT

         66 CCTTCTTCTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15    7  0.44
  16    9  0.56

ACGTcount: A:0.21, C:0.21, G:0.00, T:0.58


Consensus pattern (16 bp):   
TTTATTCATCATTCCA
Done.