Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02332.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3105
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35


Found at i:445 original size:3 final size:3

Alignment explanation


    Indices: 437--467  Score: 62
    Period size: 3  Copynumber: 10.3  Consensus size: 3

        427 GAGAGCTTGC

                                                     
        437 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT T
          1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT T

        468 TTAAGGTTTA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68


Consensus pattern (3 bp):   
TGT

Done.